3013 (ubc) UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3013	chr_2	(ubc) UBCc	2524484	2525117	+	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452943	Thaps3013.1, Thaps3013.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0055

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9124	40200 TRX_reduct 0.8646	263864 0.858	269624 TIM_phosphate_binding superfamily 0.8539	6028 NA 0.8484	37118 FeThRed_B 0.8454
34702 Sybindin superfamily 0.8451	37116 Nuc_sug_transp 0.8391	4757 Leo1 0.8363	24988 hypothetical protein 0.8331

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	179.706	7.68E-58	8 - 160	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	179.706	7.68E-58	8 - 160	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_28433	PHATRDRAFT_28433	230702	204395	Not available	Cre12.g546650.t1.2	AT3G55380.1	354622

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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