31404 XRN1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
31404 chr_1 XRN1 1599750 1602002 + XRN1
NCBI ID Ensembl Genomes exon ID
7445277 Thaps31404.2, Thaps31404.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0231
Normalized Mean Residue
Thaps_bicluster_0151
0.31
AAA superfamily
0.9108
Spb1_C superfamily
0.8997
Bromodomain superfamily
0.8988
Nucleotidyl_cyc_III superfamily
0.8979
(ZFP20) zf-TAZ
0.8973
PKc_like superfamily
0.8956
Glyco_18
0.8912
DEXDc
0.8912
Glyco_18
0.8912
PROCN superfamily
0.8909
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
XRN_N superfamily XRN 5'-3' exonuclease N-terminus; This family aligns residues towards the N-... - 281.918 1.05E-89 3 - 241 superfamily 251765
XRN1 5'-3' exonuclease [DNA replication, recombination, and repair / Cell division and... - 435.122 1.58E-139 2 - 681 multi-dom 227382
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_5588 PHATRDRAFT_5588 225760 284862 62942 Cre06.g280050.t1.2 AT1G75660.1 Not available
KEGG description KEGG Pathway
RNA degradation map03018
GO:0004527 GO:0005634 -

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC
Log in to post comments