31673 PRK05481
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31673 chr_1 PRK05481 780994 782269 - PRK05481

Synonyms

NCBI ID Ensembl Genomes exon ID
7453454 Thaps31673.2, Thaps31673.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0023

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0225
 0.26

Most Highly Correlated Transcripts

268343

NA
0.951

36078

PRX5_like
0.9079

bd1192

(bd1192) Acyl_ACP_Desat
0.9047

bd718

(bd718) PRK10387
0.9036

bd1037

(bd1037) Ycf66_N
0.9028

21821

hypothetical protein
0.9008

bd1342

(bd1342) psaL
0.9007

38608

SDR_a5
0.8998

bd208

(bd208) DUF3529
0.8988

bd1306

(bd1306) NA
0.895

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRK05481 lipoyl synthase; Provisional - 446.457 1.00E-156 97 - 384 multi-dom 235493

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28652 PHATRDRAFT_28652 172004 195138 426269 Cre02.g114400.t1.2 AT5G08415.1 Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0009107 GO:0016992 GO:0003824 GO:0005506 -

GO:0009107

lipoate biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid.
GO Category: 
BP

GO:0016992

lipoate synthase activity

Details: 
Catalysis of the reaction: protein N6-(octanoyl)lysine + 2 sulfur + 2 S-adenosyl-L-methionine = protein N6-(lipoyl)lysine + 2 L-methionine + 2 5'-deoxyadenosyl.
GO Category: 
MF

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

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