32173 (RT16) rpsP
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
32173 chr_2 (RT16) rpsP 891508 892014 - rpsP
NCBI ID Ensembl Genomes exon ID
7446540 Thaps32173.2, Thaps32173.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0055
Normalized Mean Residue
Thaps_bicluster_0001
0.47
LSm1
0.9219
hypothetical protein
0.9056
eIF1_SUI1
0.9051
hypothetical protein
0.9049
hypothetical protein
0.904
COG1832
0.8959
Cytochrom_C superfamily
0.8939
BolA
0.8937
cyclophilin_ABH_like
0.8931
GRX_PICOT_like
0.8895
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
rpsP 30S ribosomal protein S16; Reviewed cl00368 119.84 2.77E-36 3 - 77 specific 234588
Ribosomal_S16 superfamily Ribosomal protein S16; Ribosomal protein S16. - 119.84 2.77E-36 3 - 77 superfamily 260387
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
264438 PHATRDRAFT_19103 PHATRDRAFT_19103 272712 214867 Not available Cre12.g494450.t1.2 AT5G56940.1 286194
KEGG description KEGG Pathway
Not available Not available
GO:0003735 GO:0005622 GO:0005840 GO:0006412 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP
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