32945 (SDH1) sdhB
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
32945 chr_3 (SDH1) sdhB 1586677 1587636 + sdhB
NCBI ID Ensembl Genomes exon ID
7449517 Thaps32945.2, Thaps32945.3, Thaps32945.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0137
Normalized Mean Residue
Thaps_bicluster_0269
0.41
hypothetical protein
0.9268
hypothetical protein
0.9257
UxaC
0.9135
hypothetical protein
0.913
PRA1 superfamily
0.9099
0.9081
Synaptobrevin
0.9076
MmsB
0.9076
SIR2 superfamily
0.9052
Macro superfamily
0.9044
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Fer2_3 superfamily 2Fe-2S iron-sulfur cluster binding domain; The 2Fe-2S ferredoxin family have a general core... - 149.262 2.11E-45 4 - 115 superfamily 257488
Fer2_3 superfamily 2Fe-2S iron-sulfur cluster binding domain; The 2Fe-2S ferredoxin family have a general core... - 149.262 2.11E-45 4 - 115 superfamily 257488
sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed - 427.673 8.43E-153 4 - 239 multi-dom 235652
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52539 PHATRDRAFT_52539 224388 320049 415062 Cre06.g264200.t1.2 AT5G40650.1 353902
KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110
GO:0005489 GO:0005506 GO:0006118 GO:0006099 GO:0016491 GO:0008177 -

NA

Details: 
NA
GO Category: 
NA

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

NA

Details: 
NA
GO Category: 
NA

tricarboxylic acid cycle

Details: 
A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle.
GO Category: 
BP

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

succinate dehydrogenase (ubiquinone) activity

Details: 
Catalysis of the reaction: succinate + ubiquinone = fumarate + ubiquinol.
GO Category: 
MF
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