34332 mre11
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
34332 chr_5 mre11 1703134 1705151 - mre11
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0179
Normalized Mean Residue
Thaps_bicluster_0015
0.38
(bd137) Motor_domain superfamily
0.9003
(bd668) NA
0.8991
hypothetical protein
0.8985
hypothetical protein
0.8832
(bd875) NA
0.8814
hypothetical protein
0.8805
NAD_binding_8 superfamily
0.8748
S_TKc
0.8722
SNF2_N
0.8722
PIG-L
0.8708
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain; Mre11 (also known as SbcD in Escherichia coli... cl13995 193.35 1.35E-57 70 - 334 specific 163616
MPP_superfamily superfamily metallophosphatase superfamily, metallophosphatase domain; Metallophosphatases (MPPs), also known... - 193.35 1.35E-57 70 - 334 superfamily 265413
Mre11_DNA_bind superfamily Mre11 DNA-binding presumed domain; The Mre11 complex is a multi-subunit nuclease that is composed... - 125.762 7.28E-34 354 - 531 superfamily 252414
mre11 DNA repair protein (mre11); All proteins in this family for which functions are known are subunits... - 409.989 1.11E-138 67 - 466 multi-dom 233033
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54699 PHATRDRAFT_54699 214824 233741 98533 Cre12.g556911.t1.1 AT5G54260.1 250783
KEGG description KEGG Pathway
Non-homologous end-joining map03450
GO:0016787 GO:0004519 GO:0005634 GO:0006302 GO:0030145 -

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

endonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

double-strand break repair

Details: 
The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
GO Category: 
BP

manganese ion binding

Details: 
Interacting selectively and non-covalently with manganese (Mn) ions.
GO Category: 
MF
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