34554 (psbW) PLN00039
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
34554 chr_5 (psbW) PLN00039 1306287 1306737 - PLN00039
NCBI ID Ensembl Genomes exon ID
7450088 Thaps34554.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0060
Normalized Mean Residue
Thaps_bicluster_0027
0.38
(bd760) ZnMc superfamily
0.8991
(bd1306) NA
0.8921
(bd2050) rpoC2
0.8919
(bd718) PRK10387
0.8913
(bd897) NA
0.8732
COG0398
0.8719
(bd1403) NA
0.8605
(bd211) Maf_Ham1 superfamily
0.8499
(bd1161) NA
0.8439
(bd208) DUF3529
0.8435
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00039 photosystem II reaction center Psb28 protein; Provisional cl04326 201.136 6.48E-67 37 - 148 specific 177673
Psb28 superfamily Psb28 protein; Psb28 is a 13 kDa soluble protein that is directly assembled in dimeric PSII... - 201.136 6.48E-67 37 - 148 superfamily 243708
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 231595 297466 59601 Cre10.g440450.t1.2 AT4G28660.1 Not available
KEGG description KEGG Pathway
Metabolic pathways map01100
GO:0009654 GO:0015979 GO:0016020 -

photosystem II oxygen evolving complex

Details: 
A complex, composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins, that catalyzes the splitting of water to O2 and 4 H+. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ).
GO Category: 
CC

photosynthesis

Details: 
The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO Category: 
BP

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC
Log in to post comments