34594 (UNG) UDG_F1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
34594 chr_6 (UNG) UDG_F1 1362871 1364050 - UDG_F1
NCBI ID Ensembl Genomes exon ID
7442724 Thaps34594.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0399
WD40
0.9233
(Tp_Myb4R2) MYB DNA binding protein/ transcription factor-like protein
0.9151
hypothetical protein
0.915
HAD-SF-IIA-hyp3
0.91
PRK07777
0.9067
ABC_ATPase
0.9047
STKc_CDC2L1
0.9032
hypothetical protein
0.9016
UAA
0.9006
RimI
0.8997
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UDG_F1 Family 1 of Uracil-DNA glycosylase (UDG) enzymes; Uracil-DNA glycosylases (UDGs) are DNA repair... cl00483 340.632 1.30E-116 185 - 389 specific 198425
UDG_like superfamily Uracil-DNA glycosylases (UDG) and related enzymes; Uracil-DNA glycosylases (UDG) catalyzes the... - 340.632 1.30E-116 185 - 389 superfamily 260455
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12267 PHATRDRAFT_12267 Not available 256563 226938 Cre17.g746347.t1.1 AT3G18630.1 347255
KEGG description KEGG Pathway
Not available Not available
GO:0004844 GO:0006281 GO:0045437 -

uracil DNA N-glycosylase activity

Details: 
Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine.
GO Category: 
MF

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

uridine nucleosidase activity

Details: 
Catalysis of the reaction: H(2)O + uridine = ribofuranose + uracil.
GO Category: 
MF
Log in to post comments