34684 Trypsin_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34684 chr_6 Trypsin_2 721191 723815 + Trypsin_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7443594 Thaps34684.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0215
 0.25

Most Highly Correlated Transcripts

270222

0.9644

268592

VDE superfamily
0.9217

bd392

(bd392) DEXDc
0.907

bd1949

(bd1949) NA
0.9023

7506

Uba3_RUB
0.897

7597

2A0111
0.8899

bd446

(bd446) HrpA
0.8868

5135

Rubis-subs-bind
0.8864

33663

PLN02649
0.8846

574

PRK05444
0.8831

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PDZ_serine_protease PDZ domain of trypsin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins... cl00117 78.4503 3.72E-17 749 - 848 specific 238487
PDZ superfamily PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif).... - 78.4503 3.72E-17 749 - 848 superfamily 260201
Trypsin_2 Trypsin-like peptidase domain; This family includes trypsin like peptidase domains. cl19303 106.173 2.51E-26 565 - 713 specific 257693
Trypsin_2 superfamily Trypsin-like peptidase domain; This family includes trypsin like peptidase domains. - 106.173 2.51E-26 565 - 713 superfamily 267656
Trypsin Trypsin; Trypsin. - 69.3945 2.39E-13 540 - 734 multi-dom 249578

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_3211 PHATRDRAFT_3211 140384 198451 53379 Not available Not available 537128

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004295 GO:0006508 GO:0005515 GO:0004252 GO:0004289 GO:0008132 GO:0008243 GO:0008991 GO:0016808 -

GO:0004295

NA

Details: 
NA
GO Category: 
NA

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004289

NA

Details: 
NA
GO Category: 
NA

GO:0008132

NA

Details: 
NA
GO Category: 
NA

GO:0008243

NA

Details: 
NA
GO Category: 
NA

GO:0008991

NA

Details: 
NA
GO Category: 
NA

GO:0016808

NA

Details: 
NA
GO Category: 
NA

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