35189 (DPO1) PTZ00166
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
35189 chr_6 (DPO1) PTZ00166 946789 950751 + PTZ00166
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0087
Normalized Mean Residue
Thaps_bicluster_0014
0.46
(bd439) POLBc_alpha
0.8861
MCM
0.8451
COG4178
0.8364
POLBc_epsilon
0.835
HepA
0.8307
(bd718) PRK10387
0.8291
Pkinase
0.829
(APA1) Adaptin_N
0.8288
(bd878) AAT_like
0.826
hypothetical protein
0.8253
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
POLBc_delta DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B... cl10023 723.671 0 605 - 997 specific 99916
POLBc superfamily DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding... - 723.671 0 605 - 997 superfamily 245235
DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA... cl10012 413.896 5.10E-136 321 - 556 specific 99820
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 413.896 5.10E-136 321 - 556 superfamily 263941
zf-C4pol superfamily C4-type zinc-finger of DNA polymerase delta; In fission yeast this zinc-finger domain appears is... - 80.1696 8.73E-18 1035 - 1108 superfamily 258446
zf-C4pol superfamily C4-type zinc-finger of DNA polymerase delta; In fission yeast this zinc-finger domain appears is... - 80.1696 8.73E-18 1035 - 1108 superfamily 258446
PTZ00166 DNA polymerase delta catalytic subunit; Provisional - 1409.78 0 59 - 1125 multi-dom 240301
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54677 PHATRDRAFT_54677 201939 188144 455696 Cre01.g015250.t1.1 AT5G63960.1 532354
KEGG description KEGG Pathway
Homologous recombination map03440
GO:0000166 GO:0003677 GO:0003887 GO:0005634 GO:0006260 GO:0008408 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

DNA-directed DNA polymerase activity

Details: 
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

DNA replication

Details: 
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
GO Category: 
BP

3'-5' exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' end.
GO Category: 
MF

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

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NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
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NA

NA

Details: 
NA
GO Category: 
NA

NA

Details: 
NA
GO Category: 
NA
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