3563 (Tp_CCCH2) WD40 superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3563	chr_3	(Tp_CCCH2) WD40 superfamily	1260124	1261458	+	WD40 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451710	Thaps3563.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0282

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0083	0.43	1.6 20000

Most Highly Correlated Transcripts

12899 AAA 0.903	22031 Sin_N superfamily 0.8734	269076 Peptidase_C19 superfamily 0.8512	33946 (Tp_CCHH3) SSL1 0.8493	42508 WD40 0.8449	34303 TEF1 0.8446
10339 hypothetical protein 0.8391	bd174 (bd174) Tim17 superfamily 0.8351	17262 (OGG) ogg 0.8222	21654 hypothetical protein 0.8206

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily		WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	92.0128	3.76E-21	201 - 438	superfamily	238121

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_47824	PHATRDRAFT_47824	176609	66011	Not available	Not available	AT5G51980.2	495899

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003676 -

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