36204 ATM1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
36204 chr_9 ATM1 937772 940381 + ATM1

Synonyms

NCBI ID Ensembl Genomes exon ID
7448120 Thaps36204.1, Thaps36204.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0458

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0021
 0.47

Most Highly Correlated Transcripts

13448

Sec1
0.8653

269655

PRK09330
0.8571

269188

(DIC1) cytoplasmic dynein intermediate chain-like protein
0.8551

5927

UBQ superfamily
0.8532

262824

COG4581
0.852

24883

Pat_PLPL
0.8513

25364

BTB
0.8492

5664

hypothetical protein
0.8479

23908

TlyC
0.8474

269663

(COP4) SEC21
0.8459

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 367.711 4.03E-121 566 - 804 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 90.43 5.75E-20 227 - 518 superfamily 250039
ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [... - 588.557 0 305 - 800 multi-dom 227590

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_38642 PHATRDRAFT_38642 225019 247961 Not available Cre17.g727650.t1.1 Not available 484119

KEGG

KEGG description KEGG Pathway
ABC transporters map02010

GO Terms

GO:0005524 GO:0006810 GO:0016021 GO:0042626 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0042626

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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