37962 LSm3
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
37962 chr_17 LSm3 314068 314341 - LSm3
NCBI ID Ensembl Genomes exon ID
7444210 Thaps37962.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0192
hypothetical protein
0.9247
WD40
0.9191
CAF1
0.9175
hypothetical protein
0.912
hypothetical protein
0.9115
Cyt_c_Oxidase_VIb
0.91
nascent-polypeptide-associated complex alpha polypeptide-like protein
0.9089
IGPD superfamily
0.8991
dsDNA_bind
0.8967
LSm5
0.8966
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LSm3 Like-Sm protein 3; The eukaryotic LSm proteins (LSm2-8 or LSm1-7) assemble into a hetero-heptameric... cl00259 136.201 7.69E-43 4 - 85 specific 212477
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 136.201 7.69E-43 4 - 85 superfamily 260307
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_42364 PHATRDRAFT_42364 267705 204785 432584 Cre16.g662300.t1.2 AT1G76860.1 285678
KEGG description KEGG Pathway
Spliceosome map03040
GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC
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