38025 Pep_deformylase
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
38025 chr_18 Pep_deformylase 358969 359928 - Pep_deformylase
NCBI ID Ensembl Genomes exon ID
7444266 Thaps38025.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0288
SAICAR_synt_Sc
0.858
FBPase
0.8558
(bd258) HU
0.8522
(bd463) Aa_trans superfamily
0.8422
CAF1 superfamily
0.8384
(bd1652) ABC_ATPase superfamily
0.8373
NA
0.8351
PRK11713
0.8349
hypothetical protein
0.8338
(bd1893) NA
0.8314
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pep_deformylase Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-... cl00234 166.122 1.84E-50 50 - 190 specific 238271
Pep_deformylase superfamily Polypeptide or peptide deformylase; a family of metalloenzymes that catalyzes the removal of the N-... - 166.122 1.84E-50 50 - 190 superfamily 260286
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available 559382
KEGG description KEGG Pathway
Not available Not available
GO:0005506 GO:0006412 GO:0042586 GO:0008463 -

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

peptide deformylase activity

Details: 
Catalysis of the reaction: formyl-L-methionyl peptide + H2O = formate + methionyl peptide.
GO Category: 
MF

formylmethionine deformylase activity

Details: 
Catalysis of the reaction: N-formyl-L-methionine + H(2)O = L-methionine + formate.
GO Category: 
MF
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