38258 ATM1
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
38258 chr_19a_19 ATM1 5496 7982 - ATM1
NCBI ID Ensembl Genomes exon ID
7442620 Thaps38258.3, Thaps38258.2, Thaps38258.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0259
Normalized Mean Residue
Thaps_bicluster_0037
0.54
(bd1133) ATM1
1
FBPase
0.9415
HCO3_cotransp superfamily
0.9377
AAA
0.925
TRX_reduct
0.9214
Aldolase_II superfamily
0.9119
FBPase
0.9115
EEP superfamily
0.9101
Sec1
0.9096
SAICAR_synt_Sc
0.9072
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 381.578 3.53E-127 505 - 749 superfamily 266551
ABC_membrane superfamily ABC transporter transmembrane region; This family represents a unit of six transmembrane helices.... - 81.9556 2.36E-17 220 - 457 superfamily 250039
ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [... - 615.521 0 243 - 749 multi-dom 227590
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
ABC transporters map02010
GO:0005524 GO:0006810 GO:0016021 GO:0042626 GO:0016887 GO:0000166 GO:0017111 -

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF
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