40073 gpsA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40073 chr_3 gpsA 1991955 1993083 + gpsA

Synonyms

NCBI ID Ensembl Genomes exon ID
7452074 Thaps40073.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0037
 0.54

Most Highly Correlated Transcripts

262271

PIP5K
0.8981

261400

NA
0.8798

9247

hypothetical protein
0.8723

16295

FBPase
0.8688

6692

hypothetical protein
0.8679

26991

GRX_GRXh_1_2_like
0.8675

263422

(BIP3) PTZ00009
0.8646

6693

hypothetical protein
0.8617

7597

2A0111
0.8587

22792

Rab1_Ypt1
0.857

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NAD_Gly3P_dh_C superfamily NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate... - 153.506 1.74E-45 172 - 314 superfamily 254224
NAD_Gly3P_dh_C superfamily NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate... - 153.506 1.74E-45 172 - 314 superfamily 254224
NAD_Gly3P_dh_N superfamily NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; NAD-dependent glycerol-3-phosphate... - 99.2236 3.31E-25 2 - 147 superfamily 250446
gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated - 309.692 8.54E-104 1 - 317 multi-dom 234629

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd487 PHATRDRAFT_bd487 Not available 206208 Not available Not available Not available 343568

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005975 GO:0016614 GO:0004367 GO:0006072 GO:0009331 GO:0005737 GO:0016616 GO:0046168 GO:0051287 -

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
GO Category: 
MF

GO:0004367

glycerol-3-phosphate dehydrogenase [NAD+] activity

Details: 
Catalysis of the reaction: sn-glycerol 3-phosphate + NAD+ = glycerone phosphate + NADH + H+.
GO Category: 
MF

GO:0006072

glycerol-3-phosphate metabolic process

Details: 
The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol.
GO Category: 
BP

GO:0009331

glycerol-3-phosphate dehydrogenase complex

Details: 
An enzyme complex that catalyzes the dehydrogenation of sn-glycerol 3-phosphate to form glycerone phosphate.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
GO Category: 
MF

GO:0046168

glycerol-3-phosphate catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of glycerol-3-phosphate, a phosphoric monoester of glycerol.
GO Category: 
BP

GO:0051287

NAD binding

Details: 
Interacting selectively and non-covalently with nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NAD+, or the reduced form, NADH.
GO Category: 
MF

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