40089 COG0478
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40089 chr_3 COG0478 2121466 2123407 - COG0478

Synonyms

NCBI ID Ensembl Genomes exon ID
7443787 Thaps40089.4, Thaps40089.2, Thaps40089.3, Thaps40089.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0257
 0.20

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.9685

31710

RIO1_euk
0.9464

17657

HSR1_MMR1
0.9147

bd1709

(bd1709) NA
0.9137

5294

hypothetical protein
0.908

13578

SrmB
0.9011

bd1877

(bd1877) NA
0.8912

7265

PIN_SF superfamily
0.8888

bd1946

(bd1946) NA
0.885

262722

DEXDc superfamily
0.8829

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain. The RIO kinase catalytic domain family is... cl17248 289.428 4.74E-95 78 - 294 specific 240167
RIO superfamily RIO kinase family, catalytic domain. The RIO kinase catalytic domain family is part of a larger... - 289.428 4.74E-95 78 - 294 superfamily 266585
Rio2_N superfamily Rio2, N-terminal; Members of this family are found in Rio2, and are structurally homologous to the... - 107.627 2.45E-28 8 - 90 superfamily 255230
Rio2_N superfamily Rio2, N-terminal; Members of this family are found in Rio2, and are structurally homologous to the... - 107.627 2.45E-28 8 - 90 superfamily 255230
COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction... - 299.618 1.56E-97 1 - 304 multi-dom 223554

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30019 PHATRDRAFT_30019 150979 247630 52776 Cre03.g159900.t1.1 AT3G51270.1 260476

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005554 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

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