40265 PTZ00448
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40265 chr_4 PTZ00448 863644 865002 - PTZ00448

Synonyms

NCBI ID Ensembl Genomes exon ID
7453336 Thaps40265.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0230
 0.24

Most Highly Correlated Transcripts

bd1667

(bd1667) Mpp10
0.8904

bd1709

(bd1709) NA
0.8887

bd96

(bd96) eIF-3_zeta
0.8834

bd1877

(bd1877) NA
0.877

22036

ElaC
0.8566

14890

Cupin_8 superfamily
0.8539

33088

Obg_CgtA
0.8485

bd1807

(bd1807) RRS1 superfamily
0.8458

22045

(Tp_CCHH10) regulator [Rayko]
0.8397

38073

NAP
0.8263

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SBDS superfamily Shwachman-Bodian-Diamond syndrome (SBDS) protein; This family is highly conserved in species... - 126.87 2.18E-35 15 - 102 superfamily 250417
SBDS superfamily Shwachman-Bodian-Diamond syndrome (SBDS) protein; This family is highly conserved in species... - 126.87 2.18E-35 15 - 102 superfamily 250417
SBDS_C superfamily SBDS protein C-terminal domain; This family is highly conserved in species ranging from archaea to... - 80.0079 4.44E-18 108 - 243 superfamily 255327
SBDS_C superfamily SBDS protein C-terminal domain; This family is highly conserved in species ranging from archaea to... - 80.0079 4.44E-18 108 - 243 superfamily 255327
PTZ00448 hypothetical protein; Provisional - 192.556 2.19E-56 7 - 448 multi-dom 185627

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_16065 PHATRDRAFT_16065 162977 201640 453755 Cre01.g017500.t1.2 AT1G43860.1 360984

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0005554 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

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