41038 (P5CS) PLN02418
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41038 chr_6 (P5CS) PLN02418 983360 986072 + PLN02418

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0157
 0.39

Most Highly Correlated Transcripts

22690

RRM_Nop6
0.932

20825

hypothetical protein
0.9272

23210

hypothetical protein
0.9196

267979

HCO3_cotransp superfamily
0.9189

9040

ELP3
0.9176

25767

hypothetical protein
0.9127

37609

PKc_like superfamily
0.9073

22427

hypothetical protein
0.9059

34596

WD40
0.9053

23812

TrmA
0.9033

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ALDH_F18-19_ProA-GPR Gamma-glutamyl phosphate reductase (GPR), aldehyde dehydrogenase families 18 and 19; Gamma-glutamyl... cl11961 544.336 0 299 - 707 specific 143398
ALDH-SF superfamily NAD(P)+-dependent aldehyde dehydrogenase superfamily; The aldehyde dehydrogenase superfamily (ALDH-... - 544.336 0 299 - 707 superfamily 264488
AAK superfamily Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-... - 253.123 9.04E-78 9 - 272 superfamily 260430
PLN02418 delta-1-pyrroline-5-carboxylate synthase - 1234.98 0 2 - 732 multi-dom 215230

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_18027 PHATRDRAFT_18027 211069 252235 456543 Cre03.g146527.t1.1 AT2G39800.4 555969

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004350 GO:0006561 GO:0008652 GO:0004349 -

GO:0004350

glutamate-5-semialdehyde dehydrogenase activity

Details: 
Catalysis of the reaction: L-glutamate 5-semialdehyde + NADP(+) + phosphate = L-glutamyl 5-phosphate + H(+) + NADPH.
GO Category: 
MF

GO:0006561

proline biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
GO Category: 
BP

GO:0008652

cellular amino acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
GO Category: 
BP

GO:0004349

glutamate 5-kinase activity

Details: 
Catalysis of the reaction: L-glutamate + ATP = L-glutamyl 5-phosphate + ADP + H(+).
GO Category: 
MF

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