41655 Chloroa_b-bindThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
41655	chr_8	Chloroa_b-bind	1227992	1228657	-	Chloroa_b-bind

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps41655.2, Thaps41655.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0035

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0180	0.31	110000 16

Most Highly Correlated Transcripts

23889 (Lhcr9) fucoxanthin chl a/c light-harvesting protein 0.9894	2621 hypothetical protein 0.9602	268248 hypothetical protein 0.9575	3715 hypothetical protein 0.9517	31757 PLPDE_III_YBL036c_euk 0.9496	1807 hypothetical protein 0.9448
261172 (ADH2) MDR superfamily 0.9431	30701 PRK05279 0.9411	24373 hypothetical protein 0.9409	7507 hypothetical protein 0.9406

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Chloroa_b-bind		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	cl02879	68.4874	2.33E-15	1 - 143	specific	249913
Chloroa_b-bind superfamily		Chlorophyll A-B binding protein; Chlorophyll A-B binding protein.	-	68.4874	2.33E-15	1 - 143	superfamily	261492

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009765 GO:0016020 -

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