4184 FG-GAP_2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4184 chr_4 FG-GAP_2 397798 400884 + FG-GAP_2

Synonyms

NCBI ID Ensembl Genomes exon ID
7446778 Thaps4184.2, Thaps4184.3, Thaps4184.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0386

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0285
 0.31

Most Highly Correlated Transcripts

bd1078

(bd1078) NA
0.9215

9557

hypothetical protein
0.9034

bd1092

(bd1092) NA
0.8981

17860

Abhydrolase_5
0.8947

21880

hypothetical protein
0.8935

3861

hypothetical protein
0.8892

bd846

(bd846) NA
0.8879

bd463

(bd463) Aa_trans superfamily
0.8871

bd258

(bd258) HU
0.8771

264048

proline rich protein kinase like protein
0.8699

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488
FG-GAP_2 superfamily FG-GAP repeat; FG-GAP repeat. - 69.4297 2.42E-14 441 - 487 superfamily 258488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 217143 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0007155 GO:0007160 GO:0008305 GO:0004339 -

GO:0007155

cell adhesion

Details: 
The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
GO Category: 
BP

GO:0007160

cell-matrix adhesion

Details: 
The binding of a cell to the extracellular matrix via adhesion molecules.
GO Category: 
BP

GO:0008305

integrin complex

Details: 
A protein complex that is composed of one alpha subunit and one beta subunit, both of which are members of the integrin superfamily of cell adhesion receptors; the complex spans the plasma membrane and binds to extracellular matrix ligands, cell-surface ligands, and soluble ligands.
GO Category: 
CC

GO:0004339

glucan 1,4-alpha-glucosidase activity

Details: 
Catalysis of the hydrolysis of terminal (1->4)-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose.
GO Category: 
MF

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