43097 SRP1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
43097 chr_23 SRP1 102634 105195 - SRP1

Synonyms

NCBI ID Ensembl Genomes exon ID
7448272 Thaps43097.3, Thaps43097.4, Thaps43097.2, Thaps43097.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0133

Most Highly Correlated Transcripts

24525

hypothetical protein
0.8849

30701

PRK05279
0.8827

bd392

(bd392) DEXDc
0.8736

261400

NA
0.8733

9570

HECTc
0.8725

268257

fabG
0.8538

8500

PRP38 superfamily
0.851

6028

NA
0.8508

262977

NA
0.8496

11498

hypothetical protein
0.8488

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 105.474 7.53E-27 345 - 463 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 105.474 7.53E-27 345 - 463 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 105.474 7.53E-27 345 - 463 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 105.474 7.53E-27 345 - 463 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 105.474 7.53E-27 345 - 463 superfamily 237987
ARM superfamily Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence... - 105.474 7.53E-27 345 - 463 superfamily 237987
IBB superfamily Importin beta binding domain; This family consists of the importin alpha (karyopherin alpha),... - 73.9542 6.76E-16 2 - 120 superfamily 201951
SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] - 618.443 0 5 - 558 multi-dom 227396

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
32053 PHATRDRAFT_29174 PHATRDRAFT_29174 259093 39955 460128 Cre04.g215850.t1.2 AT1G09270.3 354318

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006606 GO:0006886 GO:0008565 -

GO:0006606

protein import into nucleus

Details: 
The directed movement of a protein from the cytoplasm to the nucleus.
GO Category: 
BP

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0008565

protein transporter activity

Details: 
Enables the directed movement of proteins into, out of or within a cell, or between cells.
GO Category: 
MF

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