5225 Nsp1_C superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5225 chr_5 Nsp1_C superfamily 658168 659805 - Nsp1_C superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446410 Thaps5225.2, Thaps5225.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0137

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0171
 0.35

Most Highly Correlated Transcripts

9174

DUF563
0.8836

3310

hypothetical protein
0.8834

2515

nst superfamily
0.8829

9419

hypothetical protein
0.8806

3071

NA
0.8802

21722

Aldo_ket_red
0.8793

3842

hypothetical protein
0.8778

6889

hypothetical protein
0.8753

6047

TLD superfamily
0.8751

21109

DAGK_cat
0.8745

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nsp1_C superfamily Nsp1-like C-terminal region; This family probably forms a coiled-coil. This important region of... - 71.187 6.09E-15 272 - 382 superfamily 252983

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_50425 PHATRDRAFT_50425 256517 56847 Not available Not available AT2G45000.1 327965

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0005643 GO:0017056 -

GO:0005643

nuclear pore

Details: 
Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
GO Category: 
CC

GO:0017056

structural constituent of nuclear pore

Details: 
The action of a molecule that contributes to the structural integrity of the nuclear pore complex.
GO Category: 
MF

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