5954 PRK05476
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5954 chr_6 PRK05476 343276 344995 - PRK05476

Synonyms

NCBI ID Ensembl Genomes exon ID
7448409 Thaps5954.2, Thaps5954.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0209

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0238
 0.33

Most Highly Correlated Transcripts

28496

(AHC3) PRK05476
0.9745

bd672

(bd672) NA
0.8904

644

(AK2) PTZ00247
0.8779

bd1766

(bd1766) NA
0.8778

ThpsCp056

(psbZ) photosystem II protein Z
0.8497

10143

hypothetical protein
0.849

bd624

(bd624) Glyco_transf_34 superfamily
0.8328

262279

PT_UbiA_chlorophyll
0.8308

ThpsCp019

(psbT) photosystem II protein T
0.8275

bd218

(bd218) Chloroa_b-bind superfamily
0.8273

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SAHH S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains; S-adenosyl-L-homocysteine... cl17240 738.499 0 15 - 468 specific 240619
FDH_GDH_like superfamily Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related... - 738.499 0 15 - 468 superfamily 266580
PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional - 752.726 0 1 - 475 multi-dom 235488

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
263118 Not available 204625 157800 222339 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004013 GO:0006730 -

GO:0004013

adenosylhomocysteinase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-homocysteine + H2O = adenosine + L-homocysteine.
GO Category: 
MF

GO:0006730

one-carbon metabolic process

Details: 
The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states.
GO Category: 
BP

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