6056 GCD2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
6056 chr_6 GCD2 597113 598975 + GCD2

Synonyms

NCBI ID Ensembl Genomes exon ID
7448585 Thaps6056.3, Thaps6056.2, Thaps6056.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0030

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0287
 0.36

Most Highly Correlated Transcripts

bd392

(bd392) DEXDc
0.9262

2488

hypothetical protein
0.9116

261400

NA
0.9057

31829

CBS_like
0.9046

19764

MPC superfamily
0.8995

262510

Alg6_Alg8 superfamily
0.8993

21257

hypothetical protein
0.8966

269937

M1_APN_2
0.8942

38331

YIP1 superfamily
0.8932

36494

NBD_sugar-kinase_HSP70_actin superfamily
0.8913

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal... cl00348 196.438 1.29E-57 325 - 552 specific 224105
IF-2B superfamily Initiation factor 2 subunit family; This family includes initiation factor 2B alpha, beta and delta... - 196.438 1.29E-57 325 - 552 superfamily 260372

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_21290 PHATRDRAFT_21290 141955 196803 431349 Cre16.g662902.t1.1 AT3G07300.2 312818

KEGG

KEGG description KEGG Pathway
RNA transport map03013

GO Terms

GO:0003743 GO:0005525 GO:0005851 GO:0006413 -

GO:0003743

translation initiation factor activity

Details: 
Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
GO Category: 
MF

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0005851

eukaryotic translation initiation factor 2B complex

Details: 
A multisubunit guanine nucleotide exchange factor which catalyzes the exchange of GDP bound to initiation factor eIF2 for GTP, generating active eIF2-GTP. In humans, it is composed of five subunits, alpha, beta, delta, gamma and epsilon.
GO Category: 
CC

GO:0006413

translational initiation

Details: 
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA, and an initiation complex that contains the first aminoacyl-tRNA.
GO Category: 
BP

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