6683 HMGB-UBF_HMG-boxThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6683	chr_7	HMGB-UBF_HMG-box	224387	227945	+	HMGB-UBF_HMG-box

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446614	Thaps6683.4, Thaps6683.1, Thaps6683.5, Thaps6683.2, Thaps6683.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0195

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0021	0.47	0.21 12000

Most Highly Correlated Transcripts

4108 hypothetical protein 0.9014	bd722 (bd722) NA 0.8182	25150 hypothetical protein 0.807	4894 hypothetical protein 0.7913	35266 (DYN1) DLP_1 0.7875	24145 hypothetical protein 0.781
5672 HA 0.7756	2022 HA 0.7658	23258 hypothetical protein 0.7646	7193 hypothetical protein 0.7644

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HMGB-UBF_HMG-box		HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins....	cl00082	77.2829	5.48E-17	24 - 99	specific	238686
HMG-box superfamily		High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and...	-	77.2829	5.48E-17	24 - 99	superfamily	260179

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_50240	PHATRDRAFT_50240	239670	298229	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003677 GO:0006355 GO:0004402 -

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