711 COG0385
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
711 chr_12 COG0385 636659 637951 - COG0385
NCBI ID Ensembl Genomes exon ID
7445850 Thaps711.3, Thaps711.2, Thaps711.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0059
Normalized Mean Residue
Thaps_bicluster_0133
0.40
(bd218) Chloroa_b-bind superfamily
0.9739
(bd1820) Fasciclin
0.9701
(bd1306) NA
0.9633
(bd1160) Chloroa_b-bind superfamily
0.9629
(bd1863) NA
0.9627
(bd1403) NA
0.952
(bd1645) tpt
0.9465
(bd1387) psbE
0.9451
(bd1342) psaL
0.9451
(bd1304) Ycf4
0.9413
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
COG0385 Predicted Na+-dependent transporter [General function prediction only] cl19217 201.308 2.52E-61 52 - 347 specific 223462
SBF superfamily Sodium Bile acid symporter family; This family consists of Na+/bile acid co-transporters. These... - 201.308 2.52E-61 52 - 347 superfamily 267570
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_3046 PHATRDRAFT_3046 181597 247741 308275 Cre17.g725650.t1.1 AT2G26900.1 Not available
KEGG description KEGG Pathway
Not available Not available
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0006814 GO:0008508 GO:0016020 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

bile acid:sodium symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: bile acid(out) + Na+(out) = bile acid(in) + Na+(in).
GO Category: 
MF

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC
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