8982 Reprolysin_3
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
8982 chr_12 Reprolysin_3 239916 243365 + Reprolysin_3

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0300

Most Highly Correlated Transcripts

bd884

(bd884) NA
0.9314

bd1954

(bd1954) NA
0.9004

bd1841

(bd1841) CAP10 superfamily
0.8846

23932

hypothetical protein
0.8646

262573

G_glu_transpept
0.8593

28825

Chitin_synth_C
0.8564

bd885

(bd885) NA
0.8562

bd415

(bd415) arom_aa_hydroxylase superfamily
0.8558

21559

hypothetical protein
0.8534

21695

hypothetical protein
0.8513

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Reprolysin_3 Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the... cl00064 83.9131 9.43E-19 377 - 499 specific 257898
ZnMc superfamily Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,... - 83.9131 9.43E-19 377 - 499 superfamily 260167

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 GO:0008237 GO:0008270 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

Add comment

Log in to post comments