9131 SCP superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9131 chr_12 SCP superfamily 609664 611222 - SCP superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7447569 Thaps9131.3, Thaps9131.2, Thaps9131.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0413

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0187
 0.36

Most Highly Correlated Transcripts

21410

hypothetical protein
0.9108

21220

KU superfamily
0.9073

3676

hypothetical protein
0.9011

263755

S_TKc
0.8943

3375

(Tp_Myb2R2) regulator [Rayko]
0.8927

268550

(ALD1) ALDH-SF superfamily
0.8897

21997

TPR_12
0.8831

264655

COG3899
0.8767

34590

nt_trans superfamily
0.8754

5869

hypothetical protein
0.8737

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SCP superfamily SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes. This family... - 76.0946 1.24E-16 343 - 463 superfamily 260208

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 311259 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005576 -

GO:0005576

extracellular region

Details: 
The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
GO Category: 
CC

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