9286 Tryp_SPc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9286 chr_13 Tryp_SPc 21432 23102 - Tryp_SPc

Synonyms

NCBI ID Ensembl Genomes exon ID
7450542 Thaps9286.1, Thaps9286.4, Thaps9286.2, Thaps9286.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0094

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0290
 0.30

Most Highly Correlated Transcripts

bd1852

(bd1852) NA
0.9477

bd765

(bd765) NA
0.9175

bd1081

(bd1081) NA
0.9071

2425

hypothetical protein
0.9036

bd1173

(bd1173) S_TKc
0.8996

bd1670

(bd1670) SUL1
0.8971

11089

hypothetical protein
0.895

7237

hypothetical protein
0.894

21272

hypothetical protein
0.8879

bd856

(bd856) NA
0.8868

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Tryp_SPc superfamily Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are... - 191.336 2.00E-57 168 - 415 superfamily 238113
Tryp_SPc superfamily Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are... - 191.336 2.00E-57 168 - 415 superfamily 238113
Tryp_SPc Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are... - 188.27 2.55E-56 168 - 412 multi-dom 214473

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004295 GO:0006508 GO:0004263 GO:0004252 GO:0004289 GO:0008132 GO:0008243 GO:0008991 GO:0016808 -

GO:0004295

NA

Details: 
NA
GO Category: 
NA

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004263

NA

Details: 
NA
GO Category: 
NA

GO:0004252

serine-type endopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
GO Category: 
MF

GO:0004289

NA

Details: 
NA
GO Category: 
NA

GO:0008132

NA

Details: 
NA
GO Category: 
NA

GO:0008243

NA

Details: 
NA
GO Category: 
NA

GO:0008991

NA

Details: 
NA
GO Category: 
NA

GO:0016808

NA

Details: 
NA
GO Category: 
NA

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