9617 SNC1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
9617 chr_13 SNC1 919968 920582 + SNC1

Synonyms

NCBI ID Ensembl Genomes exon ID
7447890 Thaps9617.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0370

Most Highly Correlated Transcripts

261867

(rfC_2) PRK12402
0.8668

262616

(MYB22)
0.8295

262632

Glyco_tranf_GTA_type superfamily
0.826

10348

hypothetical protein
0.8226

17600

DnaJ
0.8192

6062

hypothetical protein
0.8142

262675

AAA
0.8081

3649

hypothetical protein
0.8055

7460

hypothetical protein
0.8016

263002

(Tp_HSF_2.7b) regulator [Rayko]
0.8009

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 83.3778 7.12E-21 44 - 132 superfamily 258059
Longin superfamily Regulated-SNARE-like domain; Longin is one of the approximately 26 components required for... - 83.3778 7.12E-21 44 - 132 superfamily 258059
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 74.8832 9.66E-18 141 - 196 superfamily 250253
Synaptobrevin superfamily Synaptobrevin; Synaptobrevin. - 74.8832 9.66E-18 141 - 196 superfamily 250253
SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion] - 140.642 1.72E-41 15 - 204 multi-dom 227472

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51073 PHATRDRAFT_51073 178393 283088 373503 Cre17.g728150.t1.2 AT5G58060.1 356041

KEGG

KEGG description KEGG Pathway
SNARE interactions in vesicular transport map04130

GO Terms

GO:0016021 GO:0016192 -

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

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