PHATRDRAFT_12028 nuclear receptor co-repressor hdac3 complex subunit tblr1 (WD40)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_12028 chr_7 nuclear receptor co-repressor hdac3 complex subunit tblr1 (WD40) 472776 474956 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0103

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 227.218 7.54E-69 321 - 601 superfamily 238121
WD40 superfamily WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions... - 227.218 7.54E-69 321 - 601 superfamily 238121
LisH LisH; The LisH (lis homology) domain mediates protein dimerization and tetramerization. The LisH... cl11662 38.4527 0.000382183 9 - 27 specific 149534
LisH superfamily LisH; The LisH (lis homology) domain mediates protein dimerization and tetramerization. The LisH... - 38.4527 0.000382183 9 - 27 superfamily 199226
WD40 WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades)... cl02567 37.2918 0.00135356 254 - 293 specific 197651
WD40 superfamily WD domain, G-beta repeat; WD domain, G-beta repeat. - 37.2918 0.00135356 254 - 293 superfamily 261348
COG2319 FOG: WD40 repeat [General function prediction only] - 167.958 1.61E-45 264 - 618 multi-dom 225201

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268118 Not available 205961 256696 457509 Cre12.g527500.t1.2 AT5G67320.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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