PHATRDRAFT_12990 dead-box protein abstrakt (PRK10590)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_12990 chr_10 dead-box protein abstrakt (PRK10590) 797725 799227 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0303

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0063
 0.36

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 226.597 7.17E-71 58 - 282 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 226.597 7.17E-71 58 - 282 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 129.28 1.31E-35 292 - 420 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 129.28 1.31E-35 292 - 420 superfamily 238034
PRK10590 ATP-dependent RNA helicase RhlE; Provisional - 242.792 6.49E-74 67 - 490 multi-dom 236722

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
269450 Not available 190692 223934 418018 Cre07.g334200.t1.2 AT5G51280.1 546996

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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