PHATRDRAFT_13154 nitrite reductaselarge subunit (PRK14989)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_13154 chr_10 nitrite reductaselarge subunit (PRK14989) 280524 283178 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0133

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0204
 0.24

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NIR_SIR Nitrite and sulphite reductase 4Fe-4S domain; Sulphite and nitrite reductases are vital in the... cl19102 125.057 8.88E-33 675 - 797 specific 250346
HCP_like superfamily The HCP family of iron-sulfur proteins includes hybrid cluster protein (HCP), acetyl-CoA synthase (... - 125.057 8.88E-33 675 - 797 superfamily 267455
Fer2_BFD BFD-like [2Fe-2S] binding domain; The two Fe ions are each coordinated by two conserved cysteine... cl01093 67.3514 1.17E-13 459 - 514 specific 252526
Fer2_BFD superfamily BFD-like [2Fe-2S] binding domain; The two Fe ions are each coordinated by two conserved cysteine... - 67.3514 1.17E-13 459 - 514 superfamily 260786
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 55.6423 2.12E-09 160 - 230 superfamily 249559
Pyr_redox superfamily Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II... - 55.6423 2.12E-09 160 - 230 superfamily 249559
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 53.2836 8.07E-09 604 - 663 superfamily 251971
NIR_SIR_ferr superfamily Nitrite/Sulfite reductase ferredoxin-like half domain; Sulfite and Nitrite reductases are key to... - 53.2836 8.07E-09 604 - 663 superfamily 251971
NAD_binding_8 superfamily NAD(P)-binding Rossmann-like domain; NAD(P)-binding Rossmann-like domain. - 39.9715 0.00116111 92 - 187 superfamily 267487
PRK14989 nitrite reductase subunit NirD; Provisional - 925.29 0 1 - 885 multi-dom 184951

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
26941 Not available 200565 238081 Not available Not available AT1G63940.3 317690

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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