PHATRDRAFT_15757 small nucleolar ribonucleoprotein u3 component (RpsD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_15757 chr_21 small nucleolar ribonucleoprotein u3 component (RpsD) 401063 401608 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0140

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0154
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... cl09940 44.5478 4.24E-07 107 - 170 specific 238095
S4 superfamily S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged... - 44.5478 4.24E-07 107 - 170 superfamily 263930
RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] - 89.291 2.99E-22 7 - 167 multi-dom 223596

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
41419 Not available 202012 184178 66337 Cre03.g170750.t1.2 AT5G15750.1 258892

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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