PHATRDRAFT_20773 loc733436 protein (CBF5)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_20773 chr_10 loc733436 protein (CBF5) 218342 219966 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0200

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0192
 0.20

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_hDyskerin Pseudouridine synthase, human dyskerin like; This group consists of eukaryotic and archeal... cl00130 377.372 5.33E-130 78 - 261 specific 211338
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 377.372 5.33E-130 78 - 261 superfamily 260207
DKCLD superfamily DKCLD (NUC011) domain; This is a TruB_N/PUA domain associated N-terminal domain of Dyskerin-like... - 109.736 1.52E-29 38 - 96 superfamily 254608
DKCLD superfamily DKCLD (NUC011) domain; This is a TruB_N/PUA domain associated N-terminal domain of Dyskerin-like... - 109.736 1.52E-29 38 - 96 superfamily 254608
PUA PUA domain; The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was... cl00607 89.8416 5.15E-22 288 - 361 specific 250644
PUA superfamily PUA domain; The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was... - 89.8416 5.15E-22 288 - 361 superfamily 260527
CBF5 rRNA pseudouridine synthase, putative; This family, found in archaea and eukaryotes, includes the... - 523.564 0 46 - 372 multi-dom 232971

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
508 Not available 279208 178095 313864 Cre03.g172950.t1.2 AT3G57150.1 258871

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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