PHATRDRAFT_21316 dna topoisomerase iv subunit b (gyrB)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_21316 chr_12 dna topoisomerase iv subunit b (gyrB) 271842 274289 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0005

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0254
 0.23

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the... cl00718 229.464 2.52E-71 504 - 618 specific 173786
TOPRIM superfamily Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA,... - 229.464 2.52E-71 504 - 618 superfamily 260587
TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type... cl02783 170.434 3.22E-49 299 - 459 specific 238419
TopoII_MutL_Trans superfamily MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-... - 170.434 3.22E-49 299 - 459 superfamily 261445
HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example:... cl00075 59.1974 1.43E-10 96 - 192 specific 238030
HATPase_c superfamily Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example:... - 59.1974 1.43E-10 96 - 192 superfamily 260175
DNA_gyraseB_C superfamily DNA gyrase B subunit, carboxyl terminus; The amino terminus of eukaryotic and prokaryotic DNA... - 125.714 2.33E-34 653 - 713 superfamily 250273
DNA_gyraseB_C superfamily DNA gyrase B subunit, carboxyl terminus; The amino terminus of eukaryotic and prokaryotic DNA... - 125.714 2.33E-34 653 - 713 superfamily 250273
gyrB DNA gyrase subunit B; Validated - 1001.15 0 63 - 726 multi-dom 235542

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
39924 Not available 254096 324999 464775 Cre10.g440750.t1.2 AT5G04130.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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