PHATRDRAFT_21592 diaminopimelate decarboxylase (PLPDE_III_DapDC)Phaeodactylum tricornutum | Diatom Portal

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_21592	chr_13	diaminopimelate decarboxylase (PLPDE_III_DapDC)	556788	558233	-

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0134

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0246	0.27	47 14

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PLPDE_III_DapDC		Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase;...	cl00261	357.564	1.85E-119	63 - 452	specific	143501
PLPDE_III superfamily		Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; The fold type III PLP-dependent enzyme...	-	357.564	1.85E-119	63 - 452	superfamily	260308
PRK11165		diaminopimelate decarboxylase; Provisional	-	266.389	1.81E-83	63 - 475	multi-dom	236867

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
20613		Not available	230050	34191	438904	Cre01.g050100.t1.2	AT3G14390.1	547617

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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