PHATRDRAFT_25184 rh58_orysjdead-box atp-dependent rna helicasechloroplast precursor (SrmB)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_25184 chr_2 rh58_orysjdead-box atp-dependent rna helicasechloroplast precursor (SrmB) 200836 202707 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0028

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0115
 0.43

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 99.6196 1.55E-24 414 - 586 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 99.6196 1.55E-24 414 - 586 superfamily 238034
DEAD DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases... cl17251 128.134 3.03E-34 159 - 307 specific 249732
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 128.134 3.03E-34 159 - 307 superfamily 266587
SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription /... - 227.751 1.77E-66 142 - 595 multi-dom 223587

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
22965 Not available 257524 228634 456640 Not available AT5G19210.2 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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