PHATRDRAFT_26853 atp-dependent rna helicase (DEADc)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_26853 chr_6 atp-dependent rna helicase (DEADc) 645286 646838 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0205

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0187
 0.25

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in... cl17251 226.597 3.88E-71 16 - 219 specific 238167
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 226.597 3.88E-71 16 - 219 superfamily 266587
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 122.346 3.14E-33 246 - 370 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 122.346 3.14E-33 246 - 370 superfamily 238034
DEXDc DEAD-like helicases superfamily; DEAD-like helicases superfamily. - 153.031 2.05E-43 29 - 236 multi-dom 214692

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
14109 Not available 178776 188571 Not available Cre12.g513701.t1.2 AT1G77030.1 486355

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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