PHATRDRAFT_26921 succinate-ligase (adp-forming) (PLN00124)
Phaeodactylum tricornutum

   

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
PHATRDRAFT_26921	chr_6	succinate-ligase (adp-forming) (PLN00124)	836399	837908	+

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Not available

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Phatr_hclust_0119

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Phatr_bicluster_0196	0.27	19000 33000

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ATP-grasp_2 superfamily		ATP-grasp domain; ATP-grasp domain.	-	232.901	6.02E-74	26 - 241	superfamily	254804
Ligase_CoA superfamily		CoA-ligase; This family includes the CoA ligases Succinyl-CoA synthetase alpha and beta chains,...	-	107.342	5.43E-28	300 - 420	superfamily	249950
PLN00124		succinyl-CoA ligase [GDP-forming] subunit beta; Provisional	-	719.222	0	1 - 425	multi-dom	177736

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
31362		Not available	278922	318186	436533	Cre17.g703700.t1.1	AT2G20420.1	352366

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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