PHATRDRAFT_3388 rna polymerase sigma factor (Sig70-cyanoRpoD)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_3388 chr_15 rna polymerase sigma factor (Sig70-cyanoRpoD) 122120 123076 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0444

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0005
 0.48

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia... cl17257 44.4026 1.72E-06 255 - 307 specific 100119
Sigma70_r4 superfamily Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia... - 44.4026 1.72E-06 255 - 307 superfamily 266592
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 66.0605 3.59E-14 69 - 152 superfamily 252661
Sigma70_r2 superfamily Sigma-70 region 2; Region 2 of sigma-70 is the most conserved region of the entire protein. All... - 66.0605 3.59E-14 69 - 152 superfamily 252661
Sigma70_r3 superfamily Sigma-70 region 3; Region 3 forms a discrete compact three helical domain within the sigma-factor.... - 41.0464 3.32E-05 162 - 242 superfamily 146934
Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family; This family includes a number of... - 253.323 3.21E-82 3 - 307 multi-dom 234082

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
261083 Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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