PHATRDRAFT_41167 (HrpA)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_41167 chr_28 (HrpA) 117242 121948 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0265

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0030
 0.31

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 72.37 2.66E-14 691 - 814 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 72.37 2.66E-14 691 - 814 superfamily 266587
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 61.545 5.26E-11 1347 - 1400 superfamily 254381
OB_NTP_bind superfamily Oligonucleotide/oligosaccharide-binding (OB)-fold; This family is found towards the C-terminus of... - 61.545 5.26E-11 1347 - 1400 superfamily 254381
HELICc helicase superfamily c-terminal domain; helicase superfamily c-terminal domain. cl17351 55.2957 5.13E-09 971 - 1046 specific 197757
Helicase_C superfamily Helicase conserved C-terminal domain; The Prosite family is restricted to DEAD/H helicases, whereas... - 55.2957 5.13E-09 971 - 1046 superfamily 266641
RWD superfamily RWD domain; This domain was identified in WD40 repeat proteins and Ring finger domain proteins. The... - 41.5739 0.000192497 466 - 554 superfamily 261407
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 37.9671 0.00227407 1112 - 1151 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 37.9671 0.00227407 1112 - 1151 superfamily 262181
HrpA HrpA-like helicases [DNA replication, recombination, and repair] - 385.52 1.98E-115 691 - 1447 multi-dom 224557

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
bd446 Not available 177877 265034 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments