PHATRDRAFT_41511 translation elongation factor p (PRK00529)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_41511 chr_31 translation elongation factor p (PRK00529) 47977 48773 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0149

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0093
 0.28

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-... cl09927 81.031 3.39E-20 170 - 224 specific 240220
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 73.6463 1.52E-17 106 - 166 superfamily 263921
S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1. EF-... cl09927 73.6463 1.52E-17 106 - 166 specific 239916
S1_like superfamily S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated... - 73.6463 1.52E-17 106 - 166 superfamily 263921
EFP_N superfamily Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) KOW-like domain. - 70.1013 2.89E-16 44 - 100 superfamily 254661
EFP_N superfamily Elongation factor P (EF-P) KOW-like domain; Elongation factor P (EF-P) KOW-like domain. - 70.1013 2.89E-16 44 - 100 superfamily 254661
PRK00529 elongation factor P; Validated - 237.258 8.36E-79 42 - 226 multi-dom 234788

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
1889 Not available 198426 222979 458706 Cre16.g691000.t1.2 AT3G08740.1 554380

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments