PHATRDRAFT_42831 ribosome biogenesis protein bms1 homolog (BMS1)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_42831 chr_1 ribosome biogenesis protein bms1 homolog (BMS1) 1264928 1268658 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0137

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0160
 0.36

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
BMS1 Bms1, an essential GTPase, promotes assembly of preribosomal RNA processing complexes; Bms1 is an... cl17170 390.161 2.70E-127 43 - 275 specific 206669
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 390.161 2.70E-127 43 - 275 superfamily 266525
DUF663 superfamily Protein of unknown function (DUF663); This family contains several uncharacterized eukaryotic... - 277.708 7.93E-85 654 - 925 superfamily 252898
DUF663 superfamily Protein of unknown function (DUF663); This family contains several uncharacterized eukaryotic... - 277.708 7.93E-85 654 - 925 superfamily 252898
AARP2CN AARP2CN (NUC121) domain; This domain is the central domain of AARP2. It is weakly similar to the... cl06950 127.672 2.43E-34 233 - 319 specific 129021
AARP2CN superfamily AARP2CN (NUC121) domain; This domain is the central domain of AARP2. It is weakly similar to the... - 127.672 2.43E-34 233 - 319 superfamily 263108
BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and... - 810.893 0 12 - 1084 multi-dom 227519

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
33425 Not available 215266 250023 111848 Cre10.g445600.t1.1 AT1G06720.1 467880

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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