PHATRDRAFT_45989 chromosome 20 open reading frame 14 (PRP1_N)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_45989 chr_8 chromosome 20 open reading frame 14 (PRP1_N) 878783 881809 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0254

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 51.2268 9.16E-08 670 - 770 superfamily 238112
TPR superfamily Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF... - 51.2268 9.16E-08 670 - 770 superfamily 238112
PRP1_N superfamily PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1... - 126.261 2.88E-33 21 - 205 superfamily 253721
PRP1_N superfamily PRP1 splicing factor, N-terminal; This domain is specific to the N-terminal part of the prp1... - 126.261 2.88E-33 21 - 205 superfamily 253721
TPR_19 Tetratricopeptide repeat; Tetratricopeptide repeat. - 36.8382 0.00345232 436 - 499 multi-dom 258697
TPR_16 Tetratricopeptide repeat; Tetratricopeptide repeat. - 36.1292 0.00535557 638 - 701 multi-dom 257757

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
41117 Not available 270678 264093 419034 Cre14.g633650.t1.1 AT4G03430.1 557662

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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