PHATRDRAFT_46419 ubiquitin ligase complex f-box protein (AMN1 superfamily)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_46419 chr_10 ubiquitin ligase complex f-box protein (AMN1 superfamily) 272948 275487 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0171

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0074
 0.46

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AMN1 superfamily Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in... - 53.4852 3.46E-08 467 - 677 superfamily 187754
AMN1 superfamily Antagonist of mitotic exit network protein 1; Amn1 has been functionally characterized in... - 53.4852 3.46E-08 467 - 677 superfamily 187754
Gal_Lectin superfamily Galactose binding lectin domain; Galactose binding lectin domain. - 42.6662 3.73E-05 167 - 186 superfamily 251115
COG4886 Leucine-rich repeat (LRR) protein [Function unknown] - 38.0254 0.00877233 409 - 556 multi-dom 227223

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
25655 Not available 190702 6412 Not available Not available AT4G15475.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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