PHATRDRAFT_46522 (NTF2)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_46522 chr_10 (NTF2) 594758 596338 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0146

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0256
 0.28

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of... cl09109 84.2565 2.35E-19 29 - 175 specific 238403
NTF2_like superfamily Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family... - 84.2565 2.35E-19 29 - 175 superfamily 263720
RRM_SF RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... cl17169 56.1593 5.61E-10 400 - 463 specific 240668
RRM_SF superfamily RNA recognition motif (RRM) superfamily; RRM, also known as RBD (RNA binding domain) or RNP (... - 56.1593 5.61E-10 400 - 463 superfamily 266524
COG0724 RNA-binding proteins (RRM domain) [General function prediction only] - 55.3382 1.09E-08 382 - 463 multi-dom 223796

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
268080 Not available 251786 323498 Not available Not available AT5G48650.1 481443

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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