PHATRDRAFT_47369 (RecQ)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_47369 chr_13 (RecQ) 416108 420809 -

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0196

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0020
 0.35

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 90.3748 1.43E-20 983 - 1085 superfamily 238034
HELICc superfamily Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast... - 90.3748 1.43E-20 983 - 1085 superfamily 238034
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 65.0512 7.48E-12 746 - 900 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 65.0512 7.48E-12 746 - 900 superfamily 266587
zf-GRF superfamily GRF zinc finger; This presumed zinc binding domain is found in a variety of DNA-binding proteins.... - 63.562 3.73E-12 473 - 516 superfamily 253938
zf-GRF superfamily GRF zinc finger; This presumed zinc binding domain is found in a variety of DNA-binding proteins.... - 63.562 3.73E-12 473 - 516 superfamily 253938
SAP SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... cl02640 41.984 8.53E-05 549 - 576 specific 251054
SAP superfamily SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain... - 41.984 8.53E-05 549 - 576 superfamily 261387
RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] - 299.211 9.40E-88 714 - 1103 multi-dom 223588

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
264792 Not available 150130 190921 Not available Not available AT1G27880.1 513121

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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