PHATRDRAFT_49065 (ACE1-Sec16-like)
Phaeodactylum tricornutum

   

Summary

Chromosome Product Transcript Start End Strand Short Name
PHATRDRAFT_49065 chr_20 (ACE1-Sec16-like) 468355 474742 +

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Not available

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Phatr_hclust_0038

Motif-Guided Biclusters

Normalized Mean Residue
Phatr_bicluster_0053
 0.47

Most Highly Correlated Transcripts

Not available

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ACE1-Sec16-like Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat... cl14807 174.368 3.52E-47 1171 - 1517 specific 187750
ACE1-Sec16-like superfamily Ancestral coatomer element 1 (ACE1) of COPII coat complex assembly protein Sec16; COPII coat... - 174.368 3.52E-47 1171 - 1517 superfamily 265457
WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... cl00157 36.737 0.00761587 812 - 842 specific 238122
WW superfamily Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... - 36.737 0.00761587 812 - 842 superfamily 260224
WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... cl00157 36.737 0.00761587 812 - 842 specific 238122
WW superfamily Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... - 36.737 0.00761587 812 - 842 superfamily 260224
WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... cl00157 36.737 0.00761587 812 - 842 specific 238122
WW superfamily Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... - 36.737 0.00761587 812 - 842 superfamily 260224
WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... cl00157 36.737 0.00761587 812 - 842 specific 238122
WW superfamily Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids;... - 36.737 0.00761587 812 - 842 superfamily 260224

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
20404 Not available Not available 326553 Not available Not available AT5G47480.1 262855

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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